Amethyst is quartz (SiO2); silicon is part of that chemical formula.
Aquamarine is beryl (Be3Al2Si6O18); silicon is part of that chemical formula.
Black Obsidian is volcanic glass composed chiefly of silica (SiO2); silicon is part of that chemical formula.
Black Tourmaline is schorl, an iron-rich boron silicate of the tourmaline group; silicon is part of that chemical formula.
Bloodstone is chalcedony quartz (SiO2); silicon is part of that chemical formula.
Carnelian is quartz (SiO2); silicon is part of that chemical formula.
Citrine is quartz (SiO2); silicon is part of that chemical formula.
Clear Quartz is crystalline silicon dioxide (SiO2); silicon is part of that chemical formula.
Emerald is beryl (Be3Al2Si6O18); silicon is part of that chemical formula.
Fire Agate is chalcedony (SiO2) with iridescent limonite/goethite layers; silicon is part of that chemical formula.
Garnet is a silicate mineral of the garnet group; silicon is part of that chemical formula.
Green Tourmaline is a boron silicate of the tourmaline group; silicon is part of that chemical formula.
Hessonite is grossular garnet (Ca3Al2(SiO4)3); silicon is part of that chemical formula.
Iolite is cordierite ((Mg,Fe)2Al4Si5O18); silicon is part of that chemical formula.
Jade is nephrite or jadeite, both silicate minerals; silicon is part of that chemical formula.
Jasper is an iron-bearing, opaque variety of chalcedony (cryptocrystalline quartz); element set matches the Carnelian entry.
Kyanite is kyanite (Al2SiO5); silicon is part of that chemical formula.
Lapis lazuli is a rock, not a single mineral; Silicon is from lazurite, its principal blue mineral.
Moon Stone is the feldspar orthoclase (KAlSi3O8); silicon is part of that chemical formula.
Onyx is a banded variety of chalcedony (cryptocrystalline quartz); element set matches the Clear Quartz and Opal entries.
Opal is hydrated silica (SiO2*nH2O); silicon is part of that chemical formula.
Peridot is olivine ((Mg,Fe)2SiO4); silicon is part of that chemical formula.
Red Tourmaline is a boron silicate of the tourmaline group; silicon is part of that chemical formula.
Rose Quartz is quartz (SiO2); silicon is part of that chemical formula.
Sardius is the King James rendering of the Hebrew odem, generally identified with sard or carnelian, a red-orange chalcedony; element set matches the Carnelian entry.
Spessartite is spessartine garnet (Mn3Al2(SiO4)3); silicon is part of that chemical formula.
Tiger's Eye is chatoyant quartz (SiO2); silicon is part of that chemical formula.
White Beryl is beryl (Be3Al2Si6O18); silicon is part of that chemical formula.
Yellow Beryl is beryl (Be3Al2Si6O18); silicon is part of that chemical formula.
Yellow Topaz is topaz, an aluminium fluorosilicate (Al2SiO4(F,OH)2); silicon is part of that chemical formula.